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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13519907_13520612_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13519907 - 13520612
Intron Length:
706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCATTA
5'SS Class:
major
3'SS Sequence:
GTTTTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGGAT
U12 Branch Point Sequence:
GTTTTCTCCACA
Flanking Amino Acid:
DEGEAMTILGRYLDNVVNRQ
Intron Amino Acid Position:
587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.2
68.9
38.8
Major BPS
59.1
0.23
1.4
60.7
45.9
Major PPT
82.2
0.72
0.8
76.7
32.1
Minor 5ss
46
-0.4
3.1
65.2
46
Minor BPS
55.4
0.16
2
72
40

Associated Gene:

Gene:
TBC1D9B
Ensembl Gene ID:
ENSAPLG00000008106
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015385
13510027 - 13527561
17535
ENSAPLT00000008473
13510027 - 13527561
17535