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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13543990_13544498_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13543990 - 13544498
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAAAACC
5'SS Class:
major
3'SS Sequence:
TTTTGTGTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GGATTTCTAACT
Flanking Amino Acid:
AFQLAYQAKKHKKCSVAVPD
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.2
67
36.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
85.6
0.8
0.9
79.9
37.7
Minor 5ss
30.5
-2.2
2.7
36.6
40
Minor BPS
55.7
0.26
1.7
70.89
39.6

Associated Gene:

Gene:
MRNIP
Ensembl Gene ID:
ENSAPLG00000008639
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028124
13541631 - 13545569
3939
ENSAPLT00000008977
13541631 - 13544823
3193