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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13544533_13544671_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13544533 - 13544671
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACGGAG
5'SS Class:
major
3'SS Sequence:
GTTCTGACCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GTGTTCTGACCA
Flanking Amino Acid:
KKCSVAVPDQVKMLPGSPCH
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
60
40.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
65.2
0.34
0.9
58.5
37.2
Minor 5ss
28.7
-2.4
3.5
36.8
47.7
Minor BPS
52.4
0.07
1.8
64.45
41.9

Associated Gene:

Gene:
MRNIP
Ensembl Gene ID:
ENSAPLG00000008639
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008977
13541631 - 13544823
3193