Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13578281_13579345_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

13578281 - 13579345

Intron Length:

1065

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAATGGG

5'SS Class:

strong_major

3'SS Sequence:

TGGCCCTGGGCAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTCTAAA

U12 Branch Point Sequence:

CCTCTCTAAAAT

Flanking Amino Acid:

AVHVGQGRTGVSVVMGIPSV

Intron Amino Acid Position:

129

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

69.5

41.5

Major BPS

0.57

73.6

28.6

Major PPT

57.9

0.18

1.1

53.8

41.4

Minor 5ss

31.4

-2.1

3.2

40.6

45.6

Minor BPS

49.4

0.04

1.8

65.72

44.9

Associated Gene:

Gene:

MGAT4B

Ensembl Gene ID:

ENSAPLG00000008886

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026690

13573799 - 13590796

16998

ENSAPLT00000009297

13576662 - 13590796

14135