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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13610646_13612838_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13610646 - 13612838
Intron Length:
2193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TAATATTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTAATA
Flanking Amino Acid:
NIAYRLPHSQDQNPSPNVPR
Intron Amino Acid Position:
601

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.7
0.6
0.9
70.3
40.4
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
76.1
0.82
1.3
84.11
29.4

Associated Gene:

Gene:
MAML1
Ensembl Gene ID:
ENSAPLG00000009517
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009910
13605598 - 13623928
18331