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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13614252_13623541_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13614252 - 13623541
Intron Length:
9290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGGGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
GTATATAAAACC
Flanking Amino Acid:
QHGRSSTLIAQLHETVKRKL
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
64.4
41.8
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
92.8
0.96
0.5
93.3
15.6
Minor 5ss
29.1
-2.4
3.5
38.1
46.8
Minor BPS
45
-0.4
2
58.04
40.3

Associated Gene:

Gene:
MAML1
Ensembl Gene ID:
ENSAPLG00000009517
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009910
13605598 - 13623928
18331