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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13630355_13630842_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13630355 - 13630842
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
GTTGCTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
GACTTCAAAACT
Flanking Amino Acid:
ADPDAEKPEDWDEDMDGEWE
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
75.8
0.58
1
68.3
42.2
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
48.5
-0
1.9
66.36
44

Associated Gene:

Gene:
CANX
Ensembl Gene ID:
ENSAPLG00000009588
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010041
13563489 - 13637214
73726