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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13631485_13632478_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13631485 - 13632478
Intron Length:
994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGGTGT
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAC
U12 Branch Point Sequence:
GCTGCATTGACT
Flanking Amino Acid:
TDKKTHLYTLVLNPDNSFEI
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
63
43.8
Major BPS
66.4
0.41
1
58.7
38.1
Major PPT
92.7
0.96
0.6
85.4
29.3
Minor 5ss
44.1
-0.6
3.2
55.4
48.8
Minor BPS
57.5
0.32
1.8
73.11
43.7

Associated Gene:

Gene:
CANX
Ensembl Gene ID:
ENSAPLG00000009588
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010041
13563489 - 13637214
73726