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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13634213_13635471_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13634213 - 13635471
Intron Length:
1259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
AAACTAAAATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTGTCCAAAACT
Flanking Amino Acid:
FVFDTKPLIIQYEVNFQNGI
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
48.6
-0
1
43.6
40.5
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
63.1
0.49
2
84.88
41.6

Associated Gene:

Gene:
CANX
Ensembl Gene ID:
ENSAPLG00000009588
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010041
13563489 - 13637214
73726