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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13636007_13636493_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13636007 - 13636493
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GGTTTCTGACTG
Flanking Amino Acid:
VESFDKGTLDGWILSKAKKD
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.8
38.7
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
78.6
0.64
0.9
70.2
41.3
Minor 5ss
33.5
-1.9
2.8
34.2
41.4
Minor BPS
47.9
-0.3
1.8
53.29
41.8

Associated Gene:

Gene:
CANX
Ensembl Gene ID:
ENSAPLG00000009588
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010041
13563489 - 13637214
73726