About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13636568_13637025_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13636568 - 13637025
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGACAT
5'SS Class:
major
3'SS Sequence:
TTCTCTCCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTAAAT
U12 Branch Point Sequence:
AGGTGTGTAAAT
Flanking Amino Acid:
GTSSPPPAPKVTYRAPVPTG
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.2
65.4
40
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
77.5
0.62
0.7
73.7
24.6
Minor 5ss
36.1
-1.6
3
48.2
47.4
Minor BPS
42.8
-0.4
2.3
59.82
43.8

Associated Gene:

Gene:
CANX
Ensembl Gene ID:
ENSAPLG00000009588
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010041
13563489 - 13637214
73726