About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1365666_1366837_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1365666 - 1366837
Intron Length:
1172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGCATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTTCT
Flanking Amino Acid:
YDASAARVALGITTVLTMTT
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
81.8
38.5
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
96.3
1.04
0.5
95.7
14.9
Minor 5ss
43.9
-0.7
3.2
65.5
45.8
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
GABRB2
Ensembl Gene ID:
ENSAPLG00000013041
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022851
1339234 - 1497996
158763
ENSAPLT00000045901
1337553 - 1497996
160444
ENSAPLT00000013571
1339234 - 1483298
144065
ENSAPLT00000041017
1339234 - 1574652
235419
ENSAPLT00000037347
1337553 - 1497996
160444
ENSAPLT00000029832
1339234 - 1497996
158763