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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1366991_1368184_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1366991 - 1368184
Intron Length:
1194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGGA
5'SS Class:
major
3'SS Sequence:
TATTCTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
ATGGCCATACCA
Flanking Amino Acid:
LITKNVVFSTGAYPRLSLSF
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
66.2
39.4
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
83.6
0.76
0.7
82
29.5
Minor 5ss
34.5
-1.8
2.9
41.6
44.9
Minor BPS
48.3
-0.1
2
62.41
43.8

Associated Gene:

Gene:
GABRB2
Ensembl Gene ID:
ENSAPLG00000013041
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041017
1339234 - 1574652
235419
ENSAPLT00000037347
1337553 - 1497996
160444
ENSAPLT00000022851
1339234 - 1497996
158763
ENSAPLT00000013571
1339234 - 1483298
144065
ENSAPLT00000045901
1337553 - 1497996
160444