About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13681719_13681797_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13681719 - 13681797
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTACT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TGACACTTAATG
Flanking Amino Acid:
QFFERSVYSDRYVFASNLFE
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
86.4
28.9
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
86
0.81
0.7
80.5
24.8
Minor 5ss
38.4
-1.3
2.7
52.9
43.7
Minor BPS
57.9
0.11
1.6
60.08
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029808
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023132
13680360 - 13684167
3808