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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13682496_13683324_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13682496 - 13683324
Intron Length:
829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCGCG
5'SS Class:
major
3'SS Sequence:
AAATCTTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
TAAAACTTCACA
Flanking Amino Acid:
LKKISIEGNIAAGKSTFVRL
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
57.1
42.2
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
76.6
0.6
0.9
70
40.2
Minor 5ss
31.7
-2.1
3.3
39.7
45.8
Minor BPS
49.5
-0
2
63.72
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029808
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023132
13680360 - 13684167
3808