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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13685390_13686128_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13685390 - 13686128
Intron Length:
739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
ATTAAATCAATT
Flanking Amino Acid:
STEEVQRFFSDCKILNGALG
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.2
36.5
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
86.1
0.81
0.6
85.6
21.8
Minor 5ss
32.2
-2
3.1
37.6
42.2
Minor BPS
47.5
-0.1
2
70.31
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010309
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019851
13684814 - 13692088
7275
ENSAPLT00000010798
13684188 - 13693072
8885
ENSAPLT00000046459
13684188 - 13692432
8245
ENSAPLT00000043866
13684188 - 13692436
8249