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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13686285_13686476_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13686285 - 13686476
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGATTT
5'SS Class:
major
3'SS Sequence:
GTGCCTTTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
AATGCATTAATT
Flanking Amino Acid:
RETMGHRYVEVFKSNNVEMD
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
75.4
34.8
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
78.6
0.64
0.9
72
38
Minor 5ss
46.3
-0.4
2.8
65.6
45.6
Minor BPS
62.5
0.47
1.7
76.94
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010309
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019851
13684814 - 13692088
7275
ENSAPLT00000010798
13684188 - 13693072
8885
ENSAPLT00000046459
13684188 - 13692432
8245
ENSAPLT00000043866
13684188 - 13692436
8249