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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13688243_13689252_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13688243 - 13689252
Intron Length:
1010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGATG
5'SS Class:
major
3'SS Sequence:
AAACACATTTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
TTACGACTGACT
Flanking Amino Acid:
LKKHKERIGHRYIEIFKSSR
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
69.5
42.7
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
58.4
0.19
1
52.9
41.2
Minor 5ss
29
-2.4
3.4
38.2
47
Minor BPS
43.7
-0.4
2.3
67.95
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010309
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043866
13684188 - 13692436
8249
ENSAPLT00000019851
13684814 - 13692088
7275
ENSAPLT00000010798
13684188 - 13693072
8885
ENSAPLT00000046459
13684188 - 13692432
8245