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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13689432_13689648_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13689432 - 13689648
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
GATCTATTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
GTTGTCTGATCT
Flanking Amino Acid:
ERMRRGAYGGGYGGYDDYNG
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
68.2
0.41
0.9
61.8
38.7
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
51.6
0.13
1.8
73.14
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010309
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046459
13684188 - 13692432
8245
ENSAPLT00000043866
13684188 - 13692436
8249
ENSAPLT00000019851
13684814 - 13692088
7275
ENSAPLT00000010798
13684188 - 13693072
8885