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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13690476_13690601_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13690476 - 13690601
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTCTA
5'SS Class:
major
3'SS Sequence:
CTTAATCACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TCTGTCTTAATC
Flanking Amino Acid:
AYGSQMMGAMVKESEGVVQD
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
70.6
41.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
68.2
0.41
1
61.6
38.8
Minor 5ss
43.4
-0.7
2.8
50
46.3
Minor BPS
70.2
0.61
1.3
73.1
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010309
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046459
13684188 - 13692432
8245
ENSAPLT00000019851
13684814 - 13692088
7275
ENSAPLT00000010798
13684188 - 13693072
8885