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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13695550_13695989_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13695550 - 13695989
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTCAT
U12 Branch Point Sequence:
GAGGGAGTAATT
Flanking Amino Acid:
ALQEMGLHLSQSKLKMEDIK
Intron Amino Acid Position:
605

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
35
Major BPS
68.2
0.45
1.1
69.4
37.7
Major PPT
97
1.06
0.5
96.7
11.4
Minor 5ss
45
-0.5
2.8
65.4
39.4
Minor BPS
37.1
-0.9
2.4
50.45
43.7

Associated Gene:

Gene:
RUFY1
Ensembl Gene ID:
ENSAPLG00000010790
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011299
13693942 - 13708989
15048