Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13696085_13696883_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13696085 - 13696883

Intron Length:

799

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGCATA

5'SS Class:

strong_major

3'SS Sequence:

CTTAATTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTAAT

U12 Branch Point Sequence:

TTGTACTTAATT

Flanking Amino Acid:

ELEQMEGLKKELRKLQDEKQ

Intron Amino Acid Position:

574

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

0.9

79.7

35.3

Major BPS

78.2

0.7

77.9

32.1

Major PPT

82.5

0.73

0.9

75.9

37.6

Minor 5ss

-0.1

2.5

65.8

45.4

Minor BPS

77.3

0.93

1.4

88.96

35.9

Associated Gene:

Gene:

RUFY1

Ensembl Gene ID:

ENSAPLG00000010790

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011299

13693942 - 13708989

15048