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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13697014_13697129_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13697014 - 13697129
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTTCAT
5'SS Class:
major
3'SS Sequence:
TATTTTTAAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTATTTTTAAAT
Flanking Amino Acid:
RQQMSQLDSKCSTLEKELKS
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
65.2
40.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
73
0.52
1
71
38.6
Minor 5ss
42.2
-0.9
2.9
55.5
44
Minor BPS
73.7
0.82
1.3
85.63
34

Associated Gene:

Gene:
RUFY1
Ensembl Gene ID:
ENSAPLG00000010790
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011299
13693942 - 13708989
15048