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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13697250_13697712_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13697250 - 13697712
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTACA
5'SS Class:
strong_major
3'SS Sequence:
CCTTACTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TGTTCCTTACTT
Flanking Amino Acid:
MMSSMKQMEERLQHAEKARQ
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.6
29.6
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
82.6
0.73
0.8
76.4
31.8
Minor 5ss
36.1
-1.6
2.6
44
43
Minor BPS
75.3
0.87
1.5
88.65
36.5

Associated Gene:

Gene:
RUFY1
Ensembl Gene ID:
ENSAPLG00000010790
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011299
13693942 - 13708989
15048