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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13697811_13699079_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13697811 - 13699079
Intron Length:
1269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTACG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
AATGTCTTACCT
Flanking Amino Acid:
INLQMFHKSQNAESSLQQKT
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.5
40.4
Major BPS
75.1
0.62
1
65.6
41
Major PPT
86.7
0.83
0.7
81
31
Minor 5ss
35
-1.7
2.8
43.3
43.8
Minor BPS
59.3
0.37
1.7
74.86
42

Associated Gene:

Gene:
RUFY1
Ensembl Gene ID:
ENSAPLG00000010790
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011299
13693942 - 13708989
15048