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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13699248_13699700_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13699248 - 13699700
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTTTGTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
GTCATAGTAACT
Flanking Amino Acid:
QLKEEKKIRLELEKELELQI
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
62.1
0.27
1.2
67.7
42.2
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
45.7
-0.2
2.2
66.11
44.2

Associated Gene:

Gene:
RUFY1
Ensembl Gene ID:
ENSAPLG00000010790
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011299
13693942 - 13708989
15048