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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13699818_13700228_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13699818 - 13700228
Intron Length:
411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGACAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TGTTTCTTACAG
Flanking Amino Acid:
IRERSEKSVEVTKEDTKVEL
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
67.8
39.3
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
83.1
0.75
0.9
77
36.7
Minor 5ss
29.9
-2.3
3.3
38.1
46.8
Minor BPS
57.3
0.09
1.8
64.96
42.7

Associated Gene:

Gene:
RUFY1
Ensembl Gene ID:
ENSAPLG00000010790
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011299
13693942 - 13708989
15048