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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13701320_13701805_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13701320 - 13701805
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTACTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTTTCCTTACTG
Flanking Amino Acid:
HYVEELNRHLSCTVADLQNK
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
78.9
35.3
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
82.7
0.74
0.8
77.7
29.5
Minor 5ss
35
-1.7
3.8
55.2
49
Minor BPS
74.3
0.62
1.6
79.08
38

Associated Gene:

Gene:
RUFY1
Ensembl Gene ID:
ENSAPLG00000010790
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011299
13693942 - 13708989
15048