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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13701872_13702360_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13701872 - 13702360
Intron Length:
489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATGTATT
5'SS Class:
major
3'SS Sequence:
ACTTTACAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATATTCTCAAAT
Flanking Amino Acid:
LKETQDSDSKQDGGITAVLD
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
77.6
36.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
62.4
0.28
1
61.4
38.8
Minor 5ss
50
-0
2.5
74.1
35.5
Minor BPS
61.1
0.43
1.6
76.98
38.8

Associated Gene:

Gene:
RUFY1
Ensembl Gene ID:
ENSAPLG00000010790
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011299
13693942 - 13708989
15048