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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13702420_13703505_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13702420 - 13703505
Intron Length:
1086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATATT
5'SS Class:
strong_major
3'SS Sequence:
ATATGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ACTTATTTAATA
Flanking Amino Acid:
CLKGEDLDSQVGVIDFSLYL
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.8
89.3
23.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.7
0.69
0.9
77.6
40.8
Minor 5ss
35.6
-1.6
3
50.6
45.9
Minor BPS
65.4
0.48
1.4
70.28
36.3

Associated Gene:

Gene:
RUFY1
Ensembl Gene ID:
ENSAPLG00000010790
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011299
13693942 - 13708989
15048