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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13705314_13708718_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
13705314 - 13708718
Intron Length:
3405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGGTTA
5'SS Class:
major
3'SS Sequence:
CCCCGCCGCCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCTTTCTTCACC
Flanking Amino Acid:
PVSNDNTAKTSVRYHAMEER
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
71.2
35
Major BPS
77.5
0.68
1
79.6
33
Major PPT
58.6
0.19
0.9
48.9
34.1
Minor 5ss
48.1
-0.2
3
63.7
42.5
Minor BPS
68.9
0.58
1.7
77.35
39.1

Associated Gene:

Gene:
RUFY1
Ensembl Gene ID:
ENSAPLG00000010790
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011299
13693942 - 13708989
15048