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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13832494_13885451_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13832494 - 13885451
Intron Length:
52958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TGGTTGCTAACT
Flanking Amino Acid:
AVENADILYKAANLTNLDRL
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
77.7
0.62
0.9
74
40.4
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
48.6
-0
2.3
72.86
43.9

Associated Gene:

Gene:
ADAMTS2
Ensembl Gene ID:
ENSAPLG00000012527
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013055
13769157 - 13940855
171699