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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13885655_13896218_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13885655 - 13896218
Intron Length:
10564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TGCTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GAAGCTCTGACT
Flanking Amino Acid:
QKYLLTLMNIVNEIYHDESL
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
71.5
33.2
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
82.5
0.73
0.8
76.7
31.9
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
47.8
-0
1.7
62.2
41.6

Associated Gene:

Gene:
ADAMTS2
Ensembl Gene ID:
ENSAPLG00000012527
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013055
13769157 - 13940855
171699