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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13906894_13907774_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13906894 - 13907774
Intron Length:
881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
ATATATCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTCTGGAACA
Flanking Amino Acid:
RQDFGPSGMQGYAPVTGMCH
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
27.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
72.7
0.51
0.9
65.7
39.9
Minor 5ss
40.6
-1.1
3.1
57.4
46.8
Minor BPS
60.5
0.32
2.1
80.01
36.1

Associated Gene:

Gene:
ADAMTS2
Ensembl Gene ID:
ENSAPLG00000012527
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013055
13769157 - 13940855
171699