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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13907881_13909505_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13907881 - 13909505
Intron Length:
1625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
CTGTGCGGGACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTGCAA
U12 Branch Point Sequence:
TGCAACGTAACT
Flanking Amino Acid:
AFVVAHETGHVLGMEHDGQG
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
72.3
34.3
Major BPS
53.2
0.08
1.4
65.6
41.4
Major PPT
54.2
0.1
1.2
49
44
Minor 5ss
31.6
-2.1
2.7
34
41.5
Minor BPS
48.6
-0
2.2
70.56
45.7

Associated Gene:

Gene:
ADAMTS2
Ensembl Gene ID:
ENSAPLG00000012527
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013055
13769157 - 13940855
171699