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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13909650_13911532_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13909650 - 13911532
Intron Length:
1883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TTGCCTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
GTTACTGTAATT
Flanking Amino Acid:
CSQQELNRYLHSYDCLRDDP
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
66.3
39.5
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
78.4
0.64
0.9
72.7
37.5
Minor 5ss
32.8
-2
2.7
42.4
38.3
Minor BPS
56.2
0.27
2
77.11
39.8

Associated Gene:

Gene:
ADAMTS2
Ensembl Gene ID:
ENSAPLG00000012527
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013055
13769157 - 13940855
171699