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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13911666_13913094_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13911666 - 13913094
Intron Length:
1429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TCTTGTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAA
U12 Branch Point Sequence:
AAAGCATCATCT
Flanking Amino Acid:
FGLGYMMCTAFRTFDPCKQL
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
73.9
36.3
Major BPS
63.3
0.33
1.2
67
39.8
Major PPT
82.9
0.74
0.9
80.2
37.3
Minor 5ss
35.8
-1.6
2.9
53.8
42.8
Minor BPS
42.9
-0.4
2
58.44
43.8

Associated Gene:

Gene:
ADAMTS2
Ensembl Gene ID:
ENSAPLG00000012527
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013055
13769157 - 13940855
171699