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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13913209_13920200_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13913209 - 13920200
Intron Length:
6992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAGCG
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATTATTCCATT
Flanking Amino Acid:
LDGTMCAPGKHCFKGHCIWL
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
59.5
39.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
90
0.9
0.6
89.4
19.2
Minor 5ss
23.9
-3
3.3
29.6
43.4
Minor BPS
46.7
-0.1
2.1
70.19
41.1

Associated Gene:

Gene:
ADAMTS2
Ensembl Gene ID:
ENSAPLG00000012527
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013055
13769157 - 13940855
171699