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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13927617_13929041_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13927617 - 13929041
Intron Length:
1425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
ATGTTGTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CATTTCTTATGT
Flanking Amino Acid:
QETDATSHNLAIKNRETGRF
Intron Amino Acid Position:
739

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
74.6
0.55
0.9
66.3
44.6
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
54.5
0.22
1.9
72.18
44.9

Associated Gene:

Gene:
ADAMTS2
Ensembl Gene ID:
ENSAPLG00000012527
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013055
13769157 - 13940855
171699