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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13930540_13931219_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13930540 - 13931219
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAA
U12 Branch Point Sequence:
TAGTCCTGAAAT
Flanking Amino Acid:
WSQCSRPCGGGYQFTKYGCR
Intron Amino Acid Position:
847

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
58.9
0.22
1
50.1
34.6
Major PPT
86.8
0.83
0.7
84.9
29.9
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
67
0.61
1.6
79.96
41.2

Associated Gene:

Gene:
ADAMTS2
Ensembl Gene ID:
ENSAPLG00000012527
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013055
13769157 - 13940855
171699