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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13931353_13934321_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13931353 - 13934321
Intron Length:
2969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTGACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TTTTACTTAACT
Flanking Amino Acid:
VCNLQECSQPIWVTGEWEPC
Intron Amino Acid Position:
891

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
70.6
0.46
1
65.1
40.4
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
88.1
1.27
1.2
101.4
24.3

Associated Gene:

Gene:
ADAMTS2
Ensembl Gene ID:
ENSAPLG00000012527
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013055
13769157 - 13940855
171699