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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13934530_13935794_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13934530 - 13935794
Intron Length:
1265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CATGTCCTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAA
U12 Branch Point Sequence:
CAGAGTCTAACT
Flanking Amino Acid:
AQWRIGSWSQCSVSCGNGTQ
Intron Amino Acid Position:
961

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1.2
87.9
29.3
Major BPS
67.7
0.44
1.3
77
34.1
Major PPT
77.9
0.63
0.9
73.7
36.6
Minor 5ss
41.5
-0.9
2.9
58.8
45.7
Minor BPS
44.1
-0.3
2
58.12
44.8

Associated Gene:

Gene:
ADAMTS2
Ensembl Gene ID:
ENSAPLG00000012527
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013055
13769157 - 13940855
171699