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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13935925_13936055_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13935925 - 13936055
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCATTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTTCCTCCATT
Flanking Amino Acid:
VRICRLPPCPRNVSDPSKKT
Intron Amino Acid Position:
1004

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
88.1
25.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
67.1
0.39
1
64.3
35.6
Minor 5ss
40.3
-1.1
3.4
58.5
40.4
Minor BPS
65.7
0.57
2
88.16
37.4

Associated Gene:

Gene:
ADAMTS2
Ensembl Gene ID:
ENSAPLG00000012527
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013055
13769157 - 13940855
171699