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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13936146_13940391_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13936146 - 13940391
Intron Length:
4246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAAAGAC
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTATTTATCT
Flanking Amino Acid:
PDYPIQKISSKDHCQGDKSM
Intron Amino Acid Position:
1034

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1
65.6
32.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
31.8
-2.1
3.5
41.3
39.7
Minor BPS
61.4
0.44
1.8
80.49
41.6

Associated Gene:

Gene:
ADAMTS2
Ensembl Gene ID:
ENSAPLG00000012527
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013055
13769157 - 13940855
171699