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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13971657_13972583_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13971657 - 13972583
Intron Length:
927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCCATTTTAAAT
Flanking Amino Acid:
ELRKELIEMSSGKPHLGMEK
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
1
77.4
37.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.4
0.64
0.9
75.8
37.9
Minor 5ss
39.3
-1.2
3
56.4
40.7
Minor BPS
57.7
0.32
1.5
68.85
42.4

Associated Gene:

Gene:
CNOT6
Ensembl Gene ID:
ENSAPLG00000012715
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013250
13969374 - 13996335
26962