About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13975096_13976527_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13975096 - 13976527
Intron Length:
1432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTAA
5'SS Class:
major
3'SS Sequence:
TATTTATCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CATTATTTATCC
Flanking Amino Acid:
LQEPDRTRPTALFSVMCYNV
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
64.9
37.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.4
0.66
0.8
73.6
35.6
Minor 5ss
35
-1.7
3.4
46.8
48.5
Minor BPS
53.2
0.08
1.8
64.21
41.4

Associated Gene:

Gene:
CNOT6
Ensembl Gene ID:
ENSAPLG00000012715
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013250
13969374 - 13996335
26962