About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13976597_13976688_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13976597 - 13976688
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
AATACTTCCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTAAAAT
Flanking Amino Acid:
LDNLAGTAKRISTEQPPPRS
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
26.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
65.2
0.34
0.9
58.5
37.4
Minor 5ss
36.1
-1.6
3.3
49.4
41.3
Minor BPS
59.2
0.37
1.7
77.65
38.8

Associated Gene:

Gene:
CNOT6
Ensembl Gene ID:
ENSAPLG00000012715
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013250
13969374 - 13996335
26962