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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13976794_13977777_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13976794 - 13977777
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTACTA
5'SS Class:
major
3'SS Sequence:
AATGTGTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ATTTCTGTAAAT
Flanking Amino Acid:
LFQLQTLGLKGNPLTQDILN
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
66.2
39.1
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
73.7
0.53
1
66
44.4
Minor 5ss
41.7
-0.9
3.1
56.9
47.2
Minor BPS
61
0.42
2.1
83.47
37.5

Associated Gene:

Gene:
CNOT6
Ensembl Gene ID:
ENSAPLG00000012715
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013250
13969374 - 13996335
26962