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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13977864_13981863_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13977864 - 13981863
Intron Length:
4000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTAAG
5'SS Class:
strong_major
3'SS Sequence:
ACTCTGTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TGATTCTTACTC
Flanking Amino Acid:
PAELGNMVSLRELHLNNNLL
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.1
38.2
Major BPS
75.8
0.64
1
65.8
41
Major PPT
76.1
0.59
0.9
68.7
36.7
Minor 5ss
34
-1.8
2.9
41.6
45
Minor BPS
60.5
0.31
1.6
67.34
38.5

Associated Gene:

Gene:
CNOT6
Ensembl Gene ID:
ENSAPLG00000012715
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013250
13969374 - 13996335
26962