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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13982051_13983285_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13982051 - 13983285
Intron Length:
1235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTCCTTCACC
Flanking Amino Acid:
KSHWAELEISGKVRSLSSSL
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.9
31.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.9
0.7
0.7
75.7
26.5
Minor 5ss
33.9
-1.8
2.9
40.8
39.5
Minor BPS
81.4
0.97
1.6
90.55
30.7

Associated Gene:

Gene:
CNOT6
Ensembl Gene ID:
ENSAPLG00000012715
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013250
13969374 - 13996335
26962